science▌

### Peer Review - name: "peer-review" - description: "Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compli..." - allowed-tools: "Read Write Edit Bash"

### Scientific Brainstorming - name: "scientific-brainstorming" - description: "Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-st..."

### Optimize For Gpu - name: "optimize-for-gpu" - description: "GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpatial, and RAFT. Use whenever the user mentions GPU/CUDA/NVIDIA acceleration, or wants..."

### Opentargets Database - name: "opentargets-database" - description: "Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification."

### Latex Posters - name: "latex-posters" - description: "Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design,..." - allowed-tools: "Read Write Edit Bash"

### Pdb Database - name: "pdb-database" - description: "Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure simi..."

### Alphafold Database Fetch And Analyze - name: "alphafold-database-fetch-and-analyze" - description: "Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence metrics (pLDDT), domain boundary analysis,..."

### Scientific Writing - name: "scientific-writing" - description: "Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research..." - allowed-tools: "Read Write Edit Bash"

### Alphagenome Single Variant Analysis - name: "alphagenome-single-variant-analysis" - description: "Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about ..."

### Literature Search Arxiv - name: "literature-search-arxiv" - description: "Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use when the user asks to find research papers,..."