k-dense▌

### Biopython - name: "biopython" - description: "Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, cu..."

### Cellxgene Census - name: "cellxgene-census" - description: "Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scal..."

### Bioservices - name: "bioservices" - description: "Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analys..." - allowed-tools: "Read Write Edit Bash"

### Aeon - name: "aeon" - description: "This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working..." - allowed-tools: "Read Write Edit Bash"

### Astropy - name: "astropy" - description: "Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing ..."

### Bulk Rnaseq - name: "bulk-rnaseq" - description: "End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level cou..."

### Bgpt Paper Search - name: "bgpt-paper-search" - description: "Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, qual..."

### Benchling Integration - name: "benchling-integration" - description: "Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or t..." - allowed-tools: "Read Write Edit Bash"

### Adaptyv - name: "adaptyv" - description: "How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding ..."

### Autoskill - name: "autoskill" - description: "Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones..." - allowed-tools: "Read Write Edit Bash"