ai-ml

Claude Skills

k-dense-ai

by k-dense-ai

Claude Skills offers advanced GitHub search to find coding skills using semantic retrieval in bioinformatics and data an

Enables semantic search and retrieval of specialized coding skills from GitHub repositories and local directories, using vector similarity to match tasks with relevant bioinformatics, cheminformatics, and data analysis implementations.

github stars

341

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Both formats append explainx.ai attribution and the canonical URL for this MCP server listing.

Curated scientific skills repositoryVector similarity matchingWorks with any MCP-compatible AI

best for

  • / Scientists needing specialized bioinformatics or cheminformatics code
  • / Researchers looking for data analysis implementations
  • / Developers working on scientific computing projects

capabilities

  • / Search for domain-specific coding skills using semantic similarity
  • / Retrieve scripts and documentation from skill repositories
  • / Browse curated collections of bioinformatics and cheminformatics code
  • / Access scientific programming implementations via vector search
  • / Load skills from GitHub repositories and local directories

what it does

Enables semantic search and retrieval of specialized coding skills from GitHub repositories, focusing on bioinformatics, cheminformatics, and data analysis implementations using vector similarity matching.

about

Claude Skills is a community-built MCP server published by k-dense-ai that provides AI assistants with tools and capabilities via the Model Context Protocol. Claude Skills offers advanced GitHub search to find coding skills using semantic retrieval in bioinformatics and data an It is categorized under ai ml. This server exposes 3 tools that AI clients can invoke during conversations and coding sessions.

how to install

You can install Claude Skills in your AI client of choice. Use the install panel on this page to get one-click setup for Cursor, Claude Desktop, VS Code, and other MCP-compatible clients. This server runs locally on your machine via the stdio transport.

license

MIT

Claude Skills is released under the MIT license. This is a permissive open-source license, meaning you can freely use, modify, and distribute the software.

readme

Claude Skills MCP Server

Tests Python 3.12 License Code style: ruff PyPI version

Use Claude's powerful new Skills system with ANY AI model or coding assistant - including Cursor, Codex, GPT-5, Gemini, and more. This MCP server brings Anthropic's Agent Skills framework to the entire AI ecosystem through the Model Context Protocol.

A Model Context Protocol (MCP) server that provides intelligent search capabilities for discovering relevant Claude Agent Skills using vector embeddings and semantic similarity. This server implements the same progressive disclosure architecture that Anthropic describes in their Agent Skills engineering blog, making specialized skills available to any MCP-compatible AI application.

An open-source project by K-Dense AI - creators of autonomous AI scientists for scientific research.

This MCP server enables any MCP-compatible AI assistant to intelligently search and retrieve skills from our curated Claude Scientific Skills repository and other skill sources like the Official Claude Skills.

<a href="https://cursor.com/en-US/install-mcp?name=claude-skills-mcp&config=eyJjb21tYW5kIjoidXZ4IGNsYXVkZS1za2lsbHMtbWNwIn0%3D"> <picture> <source srcset="https://cursor.com/deeplink/mcp-install-light.svg" media="(prefers-color-scheme: dark)"> <source srcset="https://cursor.com/deeplink/mcp-install-dark.svg" media="(prefers-color-scheme: light)"> <img src="https://cursor.com/deeplink/mcp-install-dark.svg" alt="Install MCP Server" style="height:2.7em;"/> </picture> </a>

Demo

Claude Skills MCP in Action

Semantic search and progressive loading of Claude Agent Skills in Cursor

Highlights

  • Two-Package Architecture: Lightweight frontend (~15 MB) starts instantly; backend (~250 MB) downloads in background
  • No Cursor Timeout: Frontend responds in <5 seconds, solving the timeout issue
  • Semantic Search: Vector embeddings for intelligent skill discovery
  • Progressive Disclosure: Multi-level skill loading (metadata → full content → files)
  • Zero Configuration: Works out of the box with curated skills
  • Multi-Source: Load from GitHub repositories and local directories
  • Fast & Local: No API keys needed, with automatic GitHub caching
  • Configurable: Customize sources, models, and content limits

Quick Start

For Cursor Users

Add through the Cursor Directory, or add to your Cursor config (~/.cursor/mcp.json):

{
  "mcpServers": {
    "claude-skills": {
      "command": "uvx",
      "args": ["claude-skills-mcp"]
    }
  }
}

The frontend starts instantly and displays tools, automatically downloading and starting the backend in the background (~60-120s due to RAG dependencies, one-time). Subsequent uses are instant.

Using uvx (Standalone)

Run the server with default configuration:

uvx claude-skills-mcp

This starts the lightweight frontend which auto-downloads the backend and loads ~90 skills from Anthropic's official skills repository and K-Dense AI's scientific skills collection.

With Custom Configuration

# 1. Print the default configuration
uvx claude-skills-mcp --example-config > config.json

# 2. Edit config.json to your needs

# 3. Run with your custom configuration
uvx claude-skills-mcp --config config.json

Documentation

MCP Tools

The server provides three tools for working with Claude Agent Skills:

  1. find_helpful_skills - Semantic search for relevant skills based on task description
  2. read_skill_document - Retrieve specific files (scripts, data, references) from skills
  3. list_skills - View complete inventory of all loaded skills (for exploration/debugging)

See API Documentation for detailed parameters, examples, and best practices.

Architecture (v1.0.0)

The system uses a two-package architecture for optimal performance:

  • Frontend (claude-skills-mcp): Lightweight proxy (~15 MB)

    • Starts instantly (<5 seconds) ✅ No Cursor timeout!
    • Auto-downloads backend on first use
    • MCP server (stdio) for Cursor
  • Backend (claude-skills-mcp-backend): Heavy server (~250 MB)

    • Vector search with PyTorch & sentence-transformers
    • MCP server (streamable HTTP)
    • Auto-installed by frontend OR deployable standalone

Benefits:

  • ✅ Solves Cursor timeout issue (frontend starts instantly)
  • ✅ Same simple user experience (uvx claude-skills-mcp)
  • ✅ Backend downloads in background (doesn't block Cursor)
  • ✅ Can connect to remote hosted backend (no local install needed)

See Architecture Guide for detailed design and data flow.

Skill Sources

Load skills from GitHub repositories (direct skills or Claude Code plugins) or local directories.

By default, loads from:

Contributing

Contributions are welcome! To contribute:

  1. Report issues: Open an issue for bugs or feature requests
  2. Submit PRs: Fork, create a feature branch, ensure tests pass (uv run pytest tests/), then submit
  3. Code style: Run uvx ruff check src/ before committing
  4. Add tests: New features should include tests

Development

Version Management: This monorepo uses a centralized version system:

  • Edit the VERSION file at the repo root to bump the version
  • Run python3 scripts/sync-version.py to sync all references (or use --check to verify)
  • The scripts/build-all.sh script automatically syncs versions before building

For questions, email [email protected]

Join Our Community! 🚀

We'd love to have you in our Slack community! Connect with other users, share tips and tricks, get help with your skills, and be the first to know about new features and updates.

👉 Join the K-Dense Community on Slack 👈

Whether you're building custom skills, integrating with different AI models, or just exploring the possibilities of Agent Skills, our community is here to support you!

Learn More

License

This project is licensed under the Apache License 2.0.

Copyright 2025 K-Dense AI (https://k-dense.ai)

Star History

Star History Chart

FAQ

What is the Claude Skills MCP server?
Claude Skills is a Model Context Protocol (MCP) server profile on explainx.ai. MCP lets AI hosts (e.g. Claude Desktop, Cursor) call tools and resources through a standard interface; this page summarizes categories, install hints, and community ratings.
How do MCP servers relate to agent skills?
Skills are reusable instruction packages (often SKILL.md); MCP servers expose live capabilities. Teams frequently combine both—skills for workflows, MCP for APIs and data. See explainx.ai/skills and explainx.ai/mcp-servers for parallel directories.
How are reviews shown for Claude Skills?
This profile displays 64 aggregated ratings (sample rows for discoverability plus signed-in user reviews). Average score is about 4.6 out of 5—verify behavior in your own environment before production use.

Use Cases

Extended AI Capabilities

Add new capabilities to Claude beyond text generation

Example

Access external data sources, execute code, interact with tools and services

Transform Claude from chatbot to action-taking agent

Context Enhancement

Provide Claude with access to relevant context and data

Example

Load project documentation, access knowledge bases, query databases

Get more accurate, context-aware responses

Workflow Automation

Automate multi-step workflows combining AI and external tools

Example

Research → Summarize → Create document → Send notification

Complete complex tasks end-to-end without manual steps

Implementation Guide

Prerequisites

  • Claude Desktop 0.7.0+ or Cursor IDE with MCP support
  • Basic understanding of MCP architecture and capabilities
  • Access credentials for integrated services (if required)
  • Willingness to experiment and iterate on configuration

Time Estimate

15-60 minutes depending on server complexity

Installation Steps

  1. 1.Install MCP server: npm install -g [package-name] or via GitHub
  2. 2.Add server configuration to ~/.claude/mcp.json
  3. 3.Provide required credentials and configuration
  4. 4.Restart Claude Desktop to load new server
  5. 5.Test basic functionality with simple prompts
  6. 6.Explore capabilities and experiment with use cases
  7. 7.Document successful patterns for reuse

Troubleshooting

  • MCP server not loading: Check config syntax, verify installation
  • Connection errors: Check network, firewall, credentials
  • Feature not working: Read server docs, check required parameters
  • Performance issues: Monitor resource usage, check for network latency
  • Conflicts with other servers: Check port assignments, namespace collisions

Best Practices

✓ Do

  • +Read server documentation thoroughly before setup
  • +Start with simple use cases to validate functionality
  • +Test in non-production environment first
  • +Monitor resource usage and performance
  • +Keep servers updated for bug fixes and new features
  • +Document configuration for team members
  • +Use environment variables for sensitive configuration

✗ Don't

  • Don't grant overly permissive access to MCP servers
  • Don't skip reading security considerations in docs
  • Don't expose sensitive data without proper controls
  • Don't run untrusted MCP servers without code review
  • Don't ignore error messages—investigate root cause

💡 Pro Tips

  • Combine multiple MCP servers for powerful workflows
  • Create custom MCP servers for your specific needs
  • Share successful configurations with team
  • Use MCP inspector for debugging
  • Join MCP community for tips and troubleshooting

Technical Details

Architecture

Model Context Protocol standardizes how AI hosts (Claude, Cursor) communicate with external tools and data sources through server implementations.

Protocols

  • Model Context Protocol (MCP)
  • JSON-RPC 2.0
  • stdio or HTTP transport

Compatibility

  • Claude Desktop
  • Cursor IDE
  • Custom MCP clients

When to Use This

✓ Use When

Use when you need Claude to access external data, execute actions, or integrate with tools. Best for extending AI capabilities beyond conversation.

✗ Avoid When

Avoid when native integrations exist (use official APIs directly), for real-time critical systems, or when security/compliance requires zero external dependencies.

Integration

  • Tool composition: Chain multiple MCP tools in workflows
  • Context augmentation: Provide AI with relevant external data
  • Action delegation: Let AI execute tasks on external systems
  • Bidirectional sync: Keep AI context and external systems in sync

Discussion

Product Hunt–style comments (not star reviews)
  • No comments yet — start the thread.

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Ratings

4.664 reviews
  • Xiao Jackson· Dec 28, 2024

    Claude Skills is a well-scoped MCP server in the explainx.ai directory — install snippets and categories matched our Claude Code setup.

  • Kiara Ndlovu· Dec 28, 2024

    We wired Claude Skills into a staging workspace; the listing’s GitHub and npm pointers saved time versus hunting across READMEs.

  • Shikha Mishra· Dec 24, 2024

    We wired Claude Skills into a staging workspace; the listing’s GitHub and npm pointers saved time versus hunting across READMEs.

  • Kwame Wang· Dec 24, 2024

    We evaluated Claude Skills against two servers with overlapping tools; this profile had the clearer scope statement.

  • Kaira Okafor· Dec 20, 2024

    I recommend Claude Skills for teams standardizing on MCP; the explainx.ai page compares cleanly with sibling servers.

  • Isabella Gonzalez· Dec 20, 2024

    Claude Skills is a well-scoped MCP server in the explainx.ai directory — install snippets and categories matched our Claude Code setup.

  • Xiao Mensah· Nov 19, 2024

    Claude Skills reduced integration guesswork — categories and install configs on the listing matched the upstream repo.

  • Yash Thakker· Nov 15, 2024

    Claude Skills reduced integration guesswork — categories and install configs on the listing matched the upstream repo.

  • Kwame Okafor· Nov 15, 2024

    Claude Skills is among the better-indexed MCP projects we tried; the explainx.ai summary tracks the official description.

  • Sofia Flores· Nov 11, 2024

    Strong directory entry: Claude Skills surfaces stars and publisher context so we could sanity-check maintenance before adopting.

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