by k-dense-ai
Claude Skills offers advanced GitHub search to find coding skills using semantic retrieval in bioinformatics and data an
Enables semantic search and retrieval of specialized coding skills from GitHub repositories, focusing on bioinformatics, cheminformatics, and data analysis implementations using vector similarity matching.
Claude Skills is a community-built MCP server published by k-dense-ai that provides AI assistants with tools and capabilities via the Model Context Protocol. Claude Skills offers advanced GitHub search to find coding skills using semantic retrieval in bioinformatics and data an It is categorized under ai ml. This server exposes 3 tools that AI clients can invoke during conversations and coding sessions.
You can install Claude Skills in your AI client of choice. Use the install panel on this page to get one-click setup for Cursor, Claude Desktop, VS Code, and other MCP-compatible clients. This server runs locally on your machine via the stdio transport.
MIT
Claude Skills is released under the MIT license. This is a permissive open-source license, meaning you can freely use, modify, and distribute the software.
Add new capabilities to Claude beyond text generation
Example
Access external data sources, execute code, interact with tools and services
Transform Claude from chatbot to action-taking agent
Provide Claude with access to relevant context and data
Example
Load project documentation, access knowledge bases, query databases
Get more accurate, context-aware responses
Automate multi-step workflows combining AI and external tools
Example
Research → Summarize → Create document → Send notification
Complete complex tasks end-to-end without manual steps
Share your MCP server with the developer community
Claude Skills is a well-scoped MCP server in the explainx.ai directory — install snippets and categories matched our Claude Code setup.
We wired Claude Skills into a staging workspace; the listing’s GitHub and npm pointers saved time versus hunting across READMEs.
We wired Claude Skills into a staging workspace; the listing’s GitHub and npm pointers saved time versus hunting across READMEs.
We evaluated Claude Skills against two servers with overlapping tools; this profile had the clearer scope statement.
I recommend Claude Skills for teams standardizing on MCP; the explainx.ai page compares cleanly with sibling servers.
Claude Skills is a well-scoped MCP server in the explainx.ai directory — install snippets and categories matched our Claude Code setup.
Claude Skills reduced integration guesswork — categories and install configs on the listing matched the upstream repo.
Claude Skills reduced integration guesswork — categories and install configs on the listing matched the upstream repo.
Claude Skills is among the better-indexed MCP projects we tried; the explainx.ai summary tracks the official description.
Strong directory entry: Claude Skills surfaces stars and publisher context so we could sanity-check maintenance before adopting.
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Use Claude's powerful new Skills system with ANY AI model or coding assistant - including Cursor, Codex, GPT-5, Gemini, and more. This MCP server brings Anthropic's Agent Skills framework to the entire AI ecosystem through the Model Context Protocol.
A Model Context Protocol (MCP) server that provides intelligent search capabilities for discovering relevant Claude Agent Skills using vector embeddings and semantic similarity. This server implements the same progressive disclosure architecture that Anthropic describes in their Agent Skills engineering blog, making specialized skills available to any MCP-compatible AI application.
An open-source project by K-Dense AI - creators of autonomous AI scientists for scientific research.
This MCP server enables any MCP-compatible AI assistant to intelligently search and retrieve skills from our curated Claude Scientific Skills repository and other skill sources like the Official Claude Skills.
<a href="https://cursor.com/en-US/install-mcp?name=claude-skills-mcp&config=eyJjb21tYW5kIjoidXZ4IGNsYXVkZS1za2lsbHMtbWNwIn0%3D"> <picture> <source srcset="https://cursor.com/deeplink/mcp-install-light.svg" media="(prefers-color-scheme: dark)"> <source srcset="https://cursor.com/deeplink/mcp-install-dark.svg" media="(prefers-color-scheme: light)"> <img src="https://cursor.com/deeplink/mcp-install-dark.svg" alt="Install MCP Server" style="height:2.7em;"/> </picture> </a>
Semantic search and progressive loading of Claude Agent Skills in Cursor
Add through the Cursor Directory, or add to your Cursor config (~/.cursor/mcp.json):
{
"mcpServers": {
"claude-skills": {
"command": "uvx",
"args": ["claude-skills-mcp"]
}
}
}
The frontend starts instantly and displays tools, automatically downloading and starting the backend in the background (~60-120s due to RAG dependencies, one-time). Subsequent uses are instant.
Run the server with default configuration:
uvx claude-skills-mcp
This starts the lightweight frontend which auto-downloads the backend and loads ~90 skills from Anthropic's official skills repository and K-Dense AI's scientific skills collection.
# 1. Print the default configuration
uvx claude-skills-mcp --example-config > config.json
# 2. Edit config.json to your needs
# 3. Run with your custom configuration
uvx claude-skills-mcp --config config.json
The server provides three tools for working with Claude Agent Skills:
find_helpful_skills - Semantic search for relevant skills based on task descriptionread_skill_document - Retrieve specific files (scripts, data, references) from skillslist_skills - View complete inventory of all loaded skills (for exploration/debugging)See API Documentation for detailed parameters, examples, and best practices.
The system uses a two-package architecture for optimal performance:
Frontend (claude-skills-mcp): Lightweight proxy (~15 MB)
Backend (claude-skills-mcp-backend): Heavy server (~250 MB)
Benefits:
uvx claude-skills-mcp)See Architecture Guide for detailed design and data flow.
Load skills from GitHub repositories (direct skills or Claude Code plugins) or local directories.
By default, loads from:
~/.claude/skills (if it exists)Contributions are welcome! To contribute:
uv run pytest tests/), then submituvx ruff check src/ before committingVersion Management: This monorepo uses a centralized version system:
VERSION file at the repo root to bump the versionpython3 scripts/sync-version.py to sync all references (or use --check to verify)scripts/build-all.sh script automatically syncs versions before buildingFor questions, email [email protected]
We'd love to have you in our Slack community! Connect with other users, share tips and tricks, get help with your skills, and be the first to know about new features and updates.
👉 Join the K-Dense Community on Slack 👈
Whether you're building custom skills, integrating with different AI models, or just exploring the possibilities of Agent Skills, our community is here to support you!
This project is licensed under the Apache License 2.0.
Copyright 2025 K-Dense AI (https://k-dense.ai)
Prerequisites
Time Estimate
15-60 minutes depending on server complexity
Steps
Troubleshooting
✓ Do
✗ Don't
💡 Pro Tips
Architecture
Model Context Protocol standardizes how AI hosts (Claude, Cursor) communicate with external tools and data sources through server implementations.
Protocols
Compatibility
✓ Use when
Use when you need Claude to access external data, execute actions, or integrate with tools. Best for extending AI capabilities beyond conversation.
✗ Avoid when
Avoid when native integrations exist (use official APIs directly), for real-time critical systems, or when security/compliance requires zero external dependencies.